species:   Pechr
pid:       PID0246
parent:    milR-32
paralog:   
locus:     CM002800.1:719002-719055
matures:   ['UGGAGAAUGUCACUUGUGGAA', 'CUUCAGGUGCCUCUUCACU']
srr:       SRR1705825
genome:    /Users/jax/+Genomes/Fungal_genomes/Pechr.GCA_000710275.1_ASM71027v1_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Dahlmann2015-ew.SRR1705825.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Dahlmann2015-ew.SRR1705825.cram CM002800.1:719002-719055

4 out of bounds
20 alignments
16 proper strand
13 stranded perfect matches

*********************           ********************* 
UGGAGAAUGUCACUUGUGGAAUGUAUGCCUUGAUCUUCAGGUGCCUCUUCACUU
((((((..(.((((((.(((.............))).))))))).))))))...
UGGAGAAUGUCACUUGUGGAA--------------------------------- l=21 a=3 c
----------------------------------CUUCAGGUGCCUCUUCACU- l=19 a=0 c*
---------UCACUUGUGGAAUGUAUGCCU------------------------ l=21 a=5 ma
----------------------------------CUUCAGGUGCCUCUUCACU- l=19 a=0 ma*

---------UCACUUGUGGAAUGUAUGCCU------------------------ l=21 a=5 (ma)
UGGAGAAUGUCACUUG-------------------------------------- l=16 a=2 
UuGAGAAUGUCACUUGUGGA---------------------------------- l=20 a=1 
UGGAGAAUGUCACUUGUGGA---------------------------------- l=20 a=2 
UGGAGAAUGUCACUUGUGGAA--------------------------------- l=21 a=3 (c)
UGGAGAAUGUCACUUGUGGAAU-------------------------------- l=22 a=1 
UGGAGAAUGUCACUUGUGGAAa-------------------------------- l=22 a=1 
UGGAGAAUGUCACUUGUGGAAc-------------------------------- l=22 a=1 

mb-00010
ax-1011011
ku-01
ss-101110111100
fn-001
